PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g11600.1
Common NameLR48_Vigan317s001200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 574aa    MW: 64093.7 Da    PI: 5.5645
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g11600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.15e-21481570288
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                     +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ +t+ed  ++r+W+++++y  ++ks++y+l+ ++ +Fv+angL+egDf+v++  ++ +
  Vang04g11600.1 481 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGISITMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvK 570
                     79*************************999999********7778*********777777777777.******************99..3335 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-28475570IPR015300DNA-binding pseudobarrel domain
CDDcd100152.89E-35478574No hitNo description
SuperFamilySSF1019361.84E-23479568IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.9E-18480573IPR003340B3 DNA binding domain
PROSITE profilePS5086311.519480574IPR003340B3 DNA binding domain
PfamPF023621.9E-17481568IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MHDQFDATAL SSTASMEISQ QQNPDPGLGG SVGECMEDVM DTFGYMELLE ANDFFDPASI  60
FENEESENPL IEFGTLEEQV SLQEGQQEMM HQRENIEDDR KVPVCEEIKG EEEGGEGGGG  120
VVDDEMSNVF LEWLKSNKDS VSANDLRNVK LKKSTIESAA KRLGGGKEAM KQLLKLILEW  180
VQTSHLQNKR RKENSDNVND PLQAQIQDPS AQNNQNTHTS GSFAPESNSC FNNQTPWLSP  240
QTFGTDQGPI MVPNQPYSQP MVGYVGDPYT TGSPSNNITA THNHNNNPYQ PGTDQYNMME  300
SAHSWPHSQF NVPSPYSQSY GDNGLFTPGS FGGYGNNQYP YQFFHGPGDR SMRLGPSATK  360
EARKKRMARQ RRFLSHHRNH NGNHHQNQGS DPHTRLGSDN CTTGLVAPHQ ANSAAANWMY  420
WQAMAGGPAG PMAPVVPTDP LAGQTVVDRS TMHTQNSHQN RAASDRRQGW KPEKNLRFLL  480
QKVLKQSDVG SLGRIVLPKK EAETHLPELE ARDGISITME DIGTSRVWNM RYRYWPNNKS  540
RMYLLENTGD FVRANGLQEG DFIVIYSDVK CGKY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496746.10.0PREDICTED: B3 domain-containing transcription factor ABI3
SwissprotQ015931e-142ABI3_ARATH; B3 domain-containing transcription factor ABI3
TrEMBLA0A0L9T8T40.0A0A0L9T8T4_PHAAN; Uncharacterized protein
STRINGGLYMA08G47240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94483037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-135B3 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]